Correlation of mitochondrial composition with SARS-CoV-2 reads for individual species

Each panel shows the correlation across all samples between the percent of all high-quality (preprocessed) reads that align to SARS-CoV-2 versus the percent that align to the mitochondrial genomes for the indicated species. The orange numbers give the Pearson correlation coefficient.

You can select which species to show using the dropdown at the bottom of the plot.

Other options at the bottom enable:

Mouseover points for details on particular samples.

The correlation coefficients will change accordingly if you select different options for how the percent mitochondrial reads is computed or whether we analyze the direct or log10 percents.

See https://github.com/jbloom/Huanan_market_samples for results files and a fully reproducible computational pipeline.

See https://jbloom.github.io/Huanan_market_samples for links to all interactive plots.